PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0188911
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ARF
Protein Properties Length: 842aa    MW: 93554.8 Da    PI: 6.5851
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0188911genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.99.5e-24162263199
                             EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                             f+k+lt sd++++g +++ +++a+e+      +  ++ +++l+ +d++g++W++++i+r++++r++l++GW+ Fv++++L +gD ++
  RcHm_v2.0_Chr7g0188911 162 FCKTLTASDTSTHGGFSVLRRHADEClpqldmS-RQPPTQELVAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFI 247
                             99****************************963.3334459********************************************** PP

                             EEE-SSSEE..EEEEE-S CS
                      B3  82 Fkldgrsefelvvkvfrk 99 
                             F   + +++el+v+v+r+
  RcHm_v2.0_Chr7g0188911 248 FL--RGENGELRVGVRRA 263
                             **..449999*****996 PP
2Auxin_resp117.61e-38288370183
              Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                             a+ha+ t+++F+v+Y+Pr+s++eF+v+++++++++k+++s+GmRfkm+fe+e+++e+r++Gt++g++d+dp rW++SkWrsLk
  RcHm_v2.0_Chr7g0188911 288 AWHAIMTGTMFTVYYKPRTSPAEFIVPFDQYMESVKNNYSIGMRFKMRFEGEEAPEQRFTGTIIGIEDADPKRWRDSKWRSLK 370
                             79*******************************************************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 842 aa     Download sequence    
MTSSEVSIKD NGGNQRGGES FSSGFSDHND GRNNAAEGQN GHSTVPAAGR DAETALYTEL  60
WHACAGPLVT VPREGERVFY FPQGHIEQVE ASTNQVADQQ MPVYNLPPKI LCKVINVQLK  120
AEPDTDEVFA QVTLLPEPTQ DENAVEKEPP PPPPPRFQVH SFCKTLTASD TSTHGGFSVL  180
RRHADECLPQ LDMSRQPPTQ ELVAKDLHGN EWRFRHIFRG QPRRHLLQSG WSVFVSSKRL  240
VAGDAFIFLR GENGELRVGV RRAMRQQGNV PSSVISSHSM HLGVLATAWH AIMTGTMFTV  300
YYKPRTSPAE FIVPFDQYME SVKNNYSIGM RFKMRFEGEE APEQRFTGTI IGIEDADPKR  360
WRDSKWRSLK VRWDENSTIP RPERVSSWKI EPALAPPALN PLPMPRPKRP RPNMVPSSPD  420
SSVLTREVGS SKVTVDPVLQ GGGYSRVLQG QEFSTLRGSF VESESDTAEK STAWPASVDD  480
ERIDAVSGSR RFASSADNWM PSGRHEPTYT DLLSGFGTNG DASHGICQPF VDQAVASANS  540
MRKHSLDQEG KFNLNSWSML PSSLSLSLDS NQKVPIGNAS YQPQQNVRYG GLNDRSVNHV  600
HRVEQPQGNW MMPPPPPSHF ESQANAREVM PKHMPVLKHE PVKPKDGSCK LFGIPLITPE  660
TSSQRPGMNE SARHNQALAL ESDQKLEKSR GLKSVDNLLA VNESDKQTSQ QHARDVQGKA  720
QGSSTRSCTK VHKQGIALGR SVDLTKFNNY DELIAELDQL FEFGGELMAP KKNWLIVYTD  780
DEGDMMLVGD DPWQEFCGIV RKIFIYTREE VQKMNPGTLT SLGEENPAMP AEGVDAREGK  840
SQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1408412KRPRP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0ARF family protein