PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0189051
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WOX
Protein Properties Length: 212aa    MW: 23729.3 Da    PI: 4.9178
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0189051genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox49.47.7e-163191357
                            --SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                Homeobox  3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                            +R+t+t++ql++L+el++    ++p+ e+++ +  +l    +++ ++V++WFqN +a+e++
  RcHm_v2.0_Chr7g0189051 31 NRWTPTPYQLRILQELYYDraLKNPTPEQIQGICLHLklygQIENKNVFFWFQNLKARERQ 91
                            7****************96579***************99********************97 PP
2Wus_type_Homeobox925.6e-302992264
       Wus_type_Homeobox  2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                            +++RWtPtp Q++iL+ely+ ++l++P+ e+iq i  +L+ yG+ie+kNVf+WFQN kaRerqk
  RcHm_v2.0_Chr7g0189051 29 TNNRWTPTPYQLRILQELYYdRALKNPTPEQIQGICLHLKLYGQIENKNVFFWFQNLKARERQK 92
                            679***************9879*****************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    
MELQTQQLTE EGGSIQAAGS SANTPIRPTN NRWTPTPYQL RILQELYYDR ALKNPTPEQI  60
QGICLHLKLY GQIENKNVFF WFQNLKARER QKLREFRNVR VGGSLDLNFG STSSTDDGKS  120
IDLNFGSTGS TSTDRSIDLN FGLRVGYGVD GSIMEQRGEY HQEIETLPLF PMHGEDIFGN  180
MKTTSEGGSD YGGGSRISLE LSLNSYRDAD MA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.14e-24WOX family protein