PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0189281
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 234aa    MW: 26273.7 Da    PI: 9.3828
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0189281genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM158.23.3e-49141381128
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                             lppGfrF+Ptdeelv +yL+ kv + +l++ ++i+e++++ ++PwdLp  +   ++e yfFs++++ky++g+r+nr+t+sgyWkatg
  RcHm_v2.0_Chr7g0189281  14 LPPGFRFQPTDEELVFQYLRCKVFSCPLPA-SIIPEINVCLYDPWDLPGDL---KQERYFFSNKESKYPNGNRTNRVTSSGYWKATG 96 
                             79****************************.89***************554...5699***************************** PP

                     NAM  88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                             +dk+++s  +++ vg kk+Lvfy+g+ap+g+ktdWvmhey+l
  RcHm_v2.0_Chr7g0189281  97 SDKKIVSPrRNNIVGKKKSLVFYRGKAPNGSKTDWVMHEYSL 138
                             ******9867778***************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    
MDKFNFVRNG MTRLPPGFRF QPTDEELVFQ YLRCKVFSCP LPASIIPEIN VCLYDPWDLP  60
GDLKQERYFF SNKESKYPNG NRTNRVTSSG YWKATGSDKK IVSPRRNNIV GKKKSLVFYR  120
GKAPNGSKTD WVMHEYSLVN NLGTTASSTE NPINQKGNWV LCRIFLKKRS CQKDEDILLS  180
YDGFKVKNAA KGQLQITSTS PVSSSSSCSS CSGITDISSS HEAGDEEISG CTKF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.11e-79NAC family protein