PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0189871
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MIKC_MADS
Protein Properties Length: 153aa    MW: 17464.3 Da    PI: 10.8249
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0189871genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF931.5e-29959151
                            S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                  SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                            krie+++ rqvtfskRr+gilKKA+ELSvLCdaeva+i+fs++gkly y+s
  RcHm_v2.0_Chr7g0189871  9 KRIESSISRQVTFSKRRTGILKKAFELSVLCDAEVALIVFSPSGKLYQYAS 59
                            79***********************************************86 PP
2K-box44.75.5e-16591243499
                   K-box  34 eqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                             ++ +l G +L+ L ++eL+qLe+qL++++++iRs  +++  e+i+ l+kk k++qeen+ L+k+++
  RcHm_v2.0_Chr7g0189871  59 SHENLAGAELSMLGMQELKQLERQLKTGVQRIRSEMTRITSENIRMLKKKHKAQQEENRLLQKRVK 124
                             6889**********************************************************9875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    
MGRRKVELKR IESSISRQVT FSKRRTGILK KAFELSVLCD AEVALIVFSP SGKLYQYASH  60
ENLAGAELSM LGMQELKQLE RQLKTGVQRI RSEMTRITSE NIRMLKKKHK AQQEENRLLQ  120
KRVKLHELDQ YGNASCSITL GASARNVINA FQT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.12e-33MIKC_MADS family protein