PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr7g0190051

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NF-YC

Protein Properties

Length: 241aa MW: 26057.2 Da PI: 5.2388

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr7g0190051	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	179.5	3.1e-56	53	157	1	102
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavt 84 ql++fw++q ie+++dfknh+lPlarikki+kadedv+misaeaPvl++kacelfilelt+rswlhaeenkrrtl+k+diaaa+t RcHm_v2.0_Chr7g0190051 53 QLQMFWNYQrqeIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPVLFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAIT 139 89***998899********************************************************************** PP NF-YC 85 rtdifdflvdivprdelk 102 rtdifdflvdivprde+k RcHm_v2.0_Chr7g0190051 140 RTDIFDFLVDIVPRDEIK 157 *************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence
MDNNPNAAAT ATAITAQHQH QAQSATYPPA QGGPPSSVAA APFHHLLQAQ QQQLQMFWNY 60 QRQEIEQVND FKNHQLPLAR IKKIMKADED VRMISAEAPV LFAKACELFI LELTIRSWLH 120 AEENKRRTLQ KNDIAAAITR TDIFDFLVDI VPRDEIKDEA GLGAVGMVGT TASGVPYYYP 180 PIGQPAGAPG GMMIGRPAMD PTGVYAQPPS QAWQSVWQTA ADDGSYGSGG SSGQGNLDGQ 240 S

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	126	132	RRTLQKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63470.2	9e-88	NF-YC family protein