PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr7g0191441

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C3H

Protein Properties

Length: 293aa MW: 32273.3 Da PI: 8.461

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr7g0191441	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.7	1.6e-06	4	24	7	27
SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 7 rffartGtCkyGdrCkFaHgp 27 ++++r G CkyG C+++Hg+ RcHm_v2.0_Chr7g0191441 4 HYYLRPGGCKYGKACRYNHGK 24 59*****************96 PP
2	zf-CCCH	40.7	3.8e-13	45	69	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++r+G CkyG++C+F+H+ RcHm_v2.0_Chr7g0191441 45 GERECPYYMRNGSCKYGSNCRFNHP 69 789*********************9 PP
3	zf-CCCH	30	9.1e-10	177	203	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC+ff+rtG Ck+ ++Ck++H++ RcHm_v2.0_Chr7g0191441 177 PGQPLCSFFLRTGDCKFKSNCKYHHPK 203 589**********************96 PP
4	zf-CCCH	36	1.2e-11	225	248	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + +C +++r+G+Ck+G+ CkF H+ RcHm_v2.0_Chr7g0191441 225 QNICTHYSRYGICKFGPACKFDHP 248 679********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence
MQVHYYLRPG GCKYGKACRY NHGKGKPLVA PVVELNFLGL PIRQGERECP YYMRNGSCKY 60 GSNCRFNHPD PTAAGGSDPP SGFDNGGPAL LQGGLQSSSW SAPRSLNETP LYMPMMMPPS 120 QGVPSQNTEW NGYQAPVYLE RSMPAPPPYV INNSGTETNV YKQYPPSNQV DEFPERPGQP 180 LCSFFLRTGD CKFKSNCKYH HPKSQTAVSP SFALSDKGLP LRPDQNICTH YSRYGICKFG 240 PACKFDHPLH LTSSTTSGLD HQLPFSDLAN TKEAGIARSR SGTDDTIQLQ QAV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	1e-100	C3H family protein