PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr7g0191461

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 1493aa MW: 166184 Da PI: 9.0831

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr7g0191461	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.4	0.00023	1398	1421	2	23
EET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirtH 23 +Cp Cgk F ++ +L++H r+H RcHm_v2.0_Chr7g0191461 1398 VCPvkGCGKKFFSHKYLVQHRRVH 1421 69999*****************99 PP
2	zf-C2H2	11.8	0.00073	1457	1483	1	23
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 y+C Cg++F+ s++ rH r+ H RcHm_v2.0_Chr7g0191461 1457 YVCAepGCGQTFRFVSDFSRHKRKtgH 1483 899999****************99666 PP

Sequence ? help Back to Top
Protein Sequence Length: 1493 aa Download sequence
MAASEQPQEV LSWLRALPVA PEYHPTWAEF QDPIAYIFKI EKEASKYGIC KIVPPVPPAP 60 KKTAIANLNK SLVARGGPSV GKGPKALPTF TTRQQQIGFC PRKARPVQRP VWQSGEHYTF 120 NQFEAKAKSF EKSYLKKRRK KGGLNPLDVE TLYWRATVDK PFSVEYANDM PGSAFVPLSS 180 KKSGASTSRE AGDGVTLGET AWNMRGVSRS RGSLLRFMKE EIPGVTCPMV YVAMMFSWFA 240 WHVEDHDLHS LNYLHLGAGK TWYGVPREAA VAFEEVVRVQ GYGGEINPLV TFATLGEKTT 300 VMSPEVFISS GIPCCRLVQN AGEFVVTFPR AYHTGFSHGF NCGEAANIAT PEWLRVANDA 360 AVRRASINYP PMVSHFQLLY DLALALCSRT PVRNSAEPRS SRLKDKKKGE GETVVKGLFV 420 KNVIQNNELL HVLGKGSSIV LLPQSSSDIS VCSKLRVGSQ LRVNPDDLMI DGKQGIKQVK 480 GLYSVKGKLA SLCESSQHPS LNANGNASTP SKMLNMSAKR ESNVEGEGLS DQRLFSCVTC 540 GILSFSCVAI IQPREAAARY LMSADCSFFN DWAVDCEPIQ VANGDPNSSK KGPCTETGLM 600 QKSTHDGLYD VPVQSADYRN QITDPINEVD SNTEMQRDTN ALGLLALTYG DSSDSEEDQA 660 EPDAPVCGDE TNLSDCSLEG RYEYKSASPP LRDSYGGTAG VRSPTSPGFD CGNELPTVDG 720 NVENRREATN FKDNGHQYID CSVDLDTLTK TNGLGGTSID PVKVSYSGSP DALDIQPTRF 780 GQATLQKEST GTSFFPGCDQ DSSRMHVFCL EHAVEVEQQL RSFGGAHILL LCHPDYPRIV 840 DEAKEIAEEL GVNYPWNDMV FRDATREDEE RIQSALDSEE AIAGNGDWAV KMGINLFYSA 900 SLSRSHLYSK QMPYNSVIYN AFGRSSPASS PAGPEVCGRR PAKQKKIVVG KWCGKVWMSN 960 QVHPFLIKRD HEEKKVELEQ RRFHDSEMPD EKLDGKSEST RKTEKTMVTK QYSRKRKMTV 1020 EGGTTKKAKC PDAVSAHSVD DNSHQQQKRF LKNKQAKYIE SGPTKKAKFT ETEDAVSGDS 1080 MEDDFRQQNR RTLRSEQAKY IEGDDDVSDD SMGVDSHQQQ RRIAKSKQAK YIARDFSMLS 1140 DDSVGVNSDH QQRRVAESNA REFSAVSDDS LEDNIHQLHR RSLRRNKGKC IGRGNLTSQN 1200 LHGVSSPQQQ RRTSKSKQAK TVEREDAALD DTPDDNAALQ LKSFRGRQIK PETVQQKKQE 1260 TPRRVKQGSR RLQETQQKTP RIQNIQSEQN TVDVNAEEPE GGPSTRLRKR PPKEQPETGR 1320 KKAKGQPETG RKKAREQQQT GRIKVNTALG VKTKNASARK GKSASAVREE EAEFLCDVEG 1380 CTMSFGTKQE LNLHKKNVCP VKGCGKKFFS HKYLVQHRRV HEDDRPLRCP WKGCKMTFKW 1440 AWARTEHIRV HTGARPYVCA EPGCGQTFRF VSDFSRHKRK TGHSVKKGKG RSR

Sequence ? help Back to Top

Protein Sequence Length: 1493 aa Download sequence

MAASEQPQEV LSWLRALPVA PEYHPTWAEF QDPIAYIFKI EKEASKYGIC KIVPPVPPAP  60
KKTAIANLNK SLVARGGPSV GKGPKALPTF TTRQQQIGFC PRKARPVQRP VWQSGEHYTF  120
NQFEAKAKSF EKSYLKKRRK KGGLNPLDVE TLYWRATVDK PFSVEYANDM PGSAFVPLSS  180
KKSGASTSRE AGDGVTLGET AWNMRGVSRS RGSLLRFMKE EIPGVTCPMV YVAMMFSWFA  240
WHVEDHDLHS LNYLHLGAGK TWYGVPREAA VAFEEVVRVQ GYGGEINPLV TFATLGEKTT  300
VMSPEVFISS GIPCCRLVQN AGEFVVTFPR AYHTGFSHGF NCGEAANIAT PEWLRVANDA  360
AVRRASINYP PMVSHFQLLY DLALALCSRT PVRNSAEPRS SRLKDKKKGE GETVVKGLFV  420
KNVIQNNELL HVLGKGSSIV LLPQSSSDIS VCSKLRVGSQ LRVNPDDLMI DGKQGIKQVK  480
GLYSVKGKLA SLCESSQHPS LNANGNASTP SKMLNMSAKR ESNVEGEGLS DQRLFSCVTC  540
GILSFSCVAI IQPREAAARY LMSADCSFFN DWAVDCEPIQ VANGDPNSSK KGPCTETGLM  600
QKSTHDGLYD VPVQSADYRN QITDPINEVD SNTEMQRDTN ALGLLALTYG DSSDSEEDQA  660
EPDAPVCGDE TNLSDCSLEG RYEYKSASPP LRDSYGGTAG VRSPTSPGFD CGNELPTVDG  720
NVENRREATN FKDNGHQYID CSVDLDTLTK TNGLGGTSID PVKVSYSGSP DALDIQPTRF  780
GQATLQKEST GTSFFPGCDQ DSSRMHVFCL EHAVEVEQQL RSFGGAHILL LCHPDYPRIV  840
DEAKEIAEEL GVNYPWNDMV FRDATREDEE RIQSALDSEE AIAGNGDWAV KMGINLFYSA  900
SLSRSHLYSK QMPYNSVIYN AFGRSSPASS PAGPEVCGRR PAKQKKIVVG KWCGKVWMSN  960
QVHPFLIKRD HEEKKVELEQ RRFHDSEMPD EKLDGKSEST RKTEKTMVTK QYSRKRKMTV  1020
EGGTTKKAKC PDAVSAHSVD DNSHQQQKRF LKNKQAKYIE SGPTKKAKFT ETEDAVSGDS  1080
MEDDFRQQNR RTLRSEQAKY IEGDDDVSDD SMGVDSHQQQ RRIAKSKQAK YIARDFSMLS  1140
DDSVGVNSDH QQRRVAESNA REFSAVSDDS LEDNIHQLHR RSLRRNKGKC IGRGNLTSQN  1200
LHGVSSPQQQ RRTSKSKQAK TVEREDAALD DTPDDNAALQ LKSFRGRQIK PETVQQKKQE  1260
TPRRVKQGSR RLQETQQKTP RIQNIQSEQN TVDVNAEEPE GGPSTRLRKR PPKEQPETGR  1320
KKAKGQPETG RKKAREQQQT GRIKVNTALG VKTKNASARK GKSASAVREE EAEFLCDVEG  1380
CTMSFGTKQE LNLHKKNVCP VKGCGKKFFS HKYLVQHRRV HEDDRPLRCP WKGCKMTFKW  1440
AWARTEHIRV HTGARPYVCA EPGCGQTFRF VSDFSRHKRK TGHSVKKGKG RSR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	136	140	KKRRK
2	136	141	KKRRKK
3	1013	1018	SRKRKM
4	1320	1333	RKKAKGQPETGRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48430.1	0.0	C2H2 family protein