PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0191531
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family C3H
Protein Properties Length: 102aa    MW: 11287.9 Da    PI: 7.5612
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0191531genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.11.3e-073357226
                            -S---SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                            ++ +C +++r+G+ k+G+ CkF H+
  RcHm_v2.0_Chr7g0191531 33 DQNICTHYSRYGIRKFGPACKFDHP 57
                            5679********************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    
MVLMSLIHLM IITQTAVSLS FTLSDKGLPL RPDQNICTHY SRYGIRKFGP ACKFDHPSHL  60
TSSTTSDLDH QLPFSDLANT KEAGIARCRS GTDDIIQLQQ AV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.14e-17C3H family protein