PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0192641
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 261aa    MW: 30407.1 Da    PI: 8.8587
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0192641genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.71.6e-11138228183
                             EEEE-..-HHHHT.T-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT- CS
                      B3   1 ffkvltpsdvlks.grlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.egD 78 
                             f+k+lt sdv    +rl ++k+ +++        +++ ++++++t +d++g+++ + ++++  +  +vlt+GWk F+++++L    D
  RcHm_v2.0_Chr7g0192641 138 FEKQLTFSDVKDDqSRLAMSKEDVQKRlmpllneNEDLRRGIQVTTYDLDGKEYPMVFKIWVEK-IHVLTEGWKAFCHDHKLVeKQD 223
                             89********988799********9999**998744555999****************999997.689*************985778 PP

                             EEEEE CS
                      B3  79 fvvFk 83 
                             fv+  
  RcHm_v2.0_Chr7g0192641 224 FVTVW 228
                             88765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    
MARLTNEEDD DMMKAVFNLC HMKHVLVDST KDIQILEDTN RKCLSQISTK DKRKTLLIKE  60
QGDECIVNVA QGLHRNQRLQ QDPKRKALQV TGQEAIYAGQ GLTNSNVCQG LFYGNYAPPN  120
LPPVPRLRQF IEICSQPFEK QLTFSDVKDD QSRLAMSKED VQKRLMPLLN ENEDLRRGIQ  180
VTTYDLDGKE YPMVFKIWVE KIHVLTEGWK AFCHDHKLVE KQDFVTVWMF RNAATGSLCF  240
VIDLRRLPVL ETIKRRRTRR N
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.11e-27B3 family protein