PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr7g0192781

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB

Protein Properties

Length: 372aa MW: 41792.3 Da PI: 6.0721

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr7g0192781	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52	1.6e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l ++++++G g+W+++++ g+ R++k+c++rw +yl RcHm_v2.0_Chr7g0192781 14 KGLWSPEEDEKLFNYITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYL 61 678*******************************************97 PP
2	Myb_DNA-binding	46.3	1e-14	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg ++++E++l++ +++ lG++ W+ Ia+ ++ gRt++++k++w++ RcHm_v2.0_Chr7g0192781 67 RGMFSQQEEDLIISLHEVLGNR-WAQIAAQLP-GRTDNEIKNFWNS 110 788*****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence
MGRHSCCLKQ KLRKGLWSPE EDEKLFNYIT RFGVGCWSSV PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGMF SQQEEDLIIS LHEVLGNRWA QIAAQLPGRT DNEIKNFWNS CLKKKLMKQG 120 IDPTTHKPLT DEELLKDDKT NIVKCSELNN ESSSLPLVPA HEHHHELPMA NSSQGPTFLV 180 NDSSYFDGTS TGISTTQTSR AAAAFDSLSY FEFQTSIDPS GYNSDLVTST QYHPPTTNSI 240 RPSFNYEAII GYNSMPSLAN SDHGSMSGTD FSFSSSNSST AGFHMNHNNN VVENNAGTFS 300 WDINTENKLE SLFHQFDGPK SEELVMMKPN SSSWEEGQLH HQHQNSVDFS SYPLTSLSED 360 LTGANFDVFQ HI

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence

MGRHSCCLKQ KLRKGLWSPE EDEKLFNYIT RFGVGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGMF SQQEEDLIIS LHEVLGNRWA QIAAQLPGRT DNEIKNFWNS CLKKKLMKQG  120
IDPTTHKPLT DEELLKDDKT NIVKCSELNN ESSSLPLVPA HEHHHELPMA NSSQGPTFLV  180
NDSSYFDGTS TGISTTQTSR AAAAFDSLSY FEFQTSIDPS GYNSDLVTST QYHPPTTNSI  240
RPSFNYEAII GYNSMPSLAN SDHGSMSGTD FSFSSSNSST AGFHMNHNNN VVENNAGTFS  300
WDINTENKLE SLFHQFDGPK SEELVMMKPN SSSWEEGQLH HQHQNSVDFS SYPLTSLSED  360
LTGANFDVFQ HI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26660.1	7e-84	MYB family protein