PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr7g0192861

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

LBD

Protein Properties

Length: 193aa MW: 21291 Da PI: 7.7673

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr7g0192861	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	144.1	4.1e-45	12	110	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 +CaaCk+lrrkC ++C++apyfp e+p+kfanvhk+FGasnv+kll++l +++reda++sl+yeAear+rdPvyG+vg i+ lq+q+ RcHm_v2.0_Chr7g0192861 12 PCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNDLLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQV 98 7************************************************************************************ PP DUF260 88 eqlkaelallke 99 ++l++el+++++ RcHm_v2.0_Chr7g0192861 99 QRLQKELDTANA 110 *****99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence
MASSSSSSYN SPCAACKFLR RKCMPGCIFA PYFPPEEPQK FANVHKIFGA SNVTKLLNDL 60 LPHQREDAVN SLAYEAEARV RDPVYGCVGA ISFLQRQVQR LQKELDTANA DLIRYACNEI 120 IATPGVNPVV QQQIAPRSRS IDHHQFYQQG SAAIPPPAAN FQVPYNLPWN VDLQNRTSGD 180 HINEGGGCGE GRM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63090.2	8e-73	LBD family protein