PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr7g0193411

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB

Protein Properties

Length: 466aa MW: 52734.2 Da PI: 6.0892

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr7g0193411	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.5	2.8e-17	181	227	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT +Ed l+++v+q+G + W+ Ia++++ gR +kqc++rw+++l RcHm_v2.0_Chr7g0193411 181 KGQWTIDEDRVLIQLVAQYGVRKWSHIAQMLP-GRIGKQCRERWHNHL 227 799***************************.***********97 PP
2	Myb_DNA-binding	58.3	1.8e-18	233	275	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++ W++eEd++l++a+++ G++ W+ Ia++++ gRt++++k++w+ RcHm_v2.0_Chr7g0193411 233 KDTWSEEEDKILIQAHAEIGNK-WAEIAKRLP-GRTENSIKNHWN 275 679*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 466 aa Download sequence
MKDEFIPFEA SSSSKGYLQD FHHLDNQFHQ YANGSSSNPM FGVQNPCFEP YYNDNNAYTC 60 DQGSPTDVNF YECKPLNIAD NLGHGQVLDN FQSLNFPHPR SNSIGHMMGI SHRSGTNFLP 120 LTNSQDIKPM SFVAPDEVSC INSENGYYKR AGINHKGTSR LSTIARAGST FKGRKKNNVV 180 KGQWTIDEDR VLIQLVAQYG VRKWSHIAQM LPGRIGKQCR ERWHNHLRPD IKKDTWSEEE 240 DKILIQAHAE IGNKWAEIAK RLPGRTENSI KNHWNATKRR QYSKRKCRSK YPRGSLLQDY 300 IKSLNLDASP NTGRQRKNNN NNNNNNSSNS SPADHNNAST ASTKVQSQIN VGFNSESDSR 360 LVPNYEFSEE DPDFCFDENM FQEGCSIDSL LDDIPCATDF GENGNDFDGK MMVSSDHEPF 420 SVHDEKNFEV LAMQVDLGSA VMESTEVKKE LDLVEMMSQV NEADDA

Sequence ? help Back to Top

Protein Sequence Length: 466 aa Download sequence

MKDEFIPFEA SSSSKGYLQD FHHLDNQFHQ YANGSSSNPM FGVQNPCFEP YYNDNNAYTC  60
DQGSPTDVNF YECKPLNIAD NLGHGQVLDN FQSLNFPHPR SNSIGHMMGI SHRSGTNFLP  120
LTNSQDIKPM SFVAPDEVSC INSENGYYKR AGINHKGTSR LSTIARAGST FKGRKKNNVV  180
KGQWTIDEDR VLIQLVAQYG VRKWSHIAQM LPGRIGKQCR ERWHNHLRPD IKKDTWSEEE  240
DKILIQAHAE IGNKWAEIAK RLPGRTENSI KNHWNATKRR QYSKRKCRSK YPRGSLLQDY  300
IKSLNLDASP NTGRQRKNNN NNNNNNSSNS SPADHNNAST ASTKVQSQIN VGFNSESDSR  360
LVPNYEFSEE DPDFCFDENM FQEGCSIDSL LDDIPCATDF GENGNDFDGK MMVSSDHEPF  420
SVHDEKNFEV LAMQVDLGSA VMESTEVKKE LDLVEMMSQV NEADDA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18770.1	1e-105	MYB family protein