PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0193761
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family bHLH
Protein Properties Length: 190aa    MW: 21553 Da    PI: 10.201
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0193761genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.41.3e-081566654
                            HHHHHHHHHHHHHHHHHHHCTSCCC.....TTS-.STCHHHHHHHHHHHHHH CS
                     HLH  6 nerErrRRdriNsafeeLrellPkas..kapskK.lsKaeiLekAveYIksL 54
                            + +Er+RR +++    +L +++P+++  + +sk  ++  + L +A  YIk+L
  RcHm_v2.0_Chr7g0193761 15 KTVERNRRIHMKGLCLKLASMVPPQYykSSKSKEmMTQQSQLDLAASYIKQL 66
                            679*********************66687777778****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    
MKKCTSETSS KLDRKTVERN RRIHMKGLCL KLASMVPPQY YKSSKSKEMM TQQSQLDLAA  60
SYIKQLTERI ENLKERKEKE LKSKLGTSNK SSINNVDRPN KAVVVGSRLP VIKLTESGSS  120
IELMLISGLH KNFMFYEVIS VLEEEGAEVV SANFSTVGDK VFHTIHAQVK ISRVGVETTT  180
VWQRLQDLIY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.11e-25bHLH family protein