PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr7g0195661

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

ERF

Protein Properties

Length: 488aa MW: 53526.6 Da PI: 10.4337

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr7g0195661	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	52.4	1.3e-16	420	469	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +g+W+AeIr+p + +r +lg+f+tae+Aa +++a+ l+g RcHm_v2.0_Chr7g0195661 420 KFLGVRQRP-WGKWAAEIREP-----HsgRRLWLGTFDTAEDAAMVYDKAAVLLRG 469 688****.******7.....337********************98887 PP

Sequence ? help Back to Top
Protein Sequence Length: 488 aa Download sequence
MGQDIIKQLK GMNGQAVPVG YGSPNSDAGH VVLGSSKRCS FQAQEKLSRP FVSLGQDVTN 60 RLKFKLKRME MRSLGYESPK DDARQVVLEA SRRGSFLQAP EKHAKTLDGT GQDGRAVPVG 120 LDSPKGDATH PVLEASKSCS FLQAPEKHAE MFDNTGHNGS PVPVGLDSRK GDARHLVLEL 180 PKSFRQAQKK RSKTLANRGQ DVTNKSKALD WNAVSFGCDS PKDDARHVVL EASKSFLQAH 240 EKHSKKLDNM GQDLTEKLKV KLKLKKGLHG RPVPVRDDGL KGDAGNLVLE ASKSLEQSIG 300 GLIDGGGNTE VDQHTQMETK SIKPRLVRIS VTDGDATESS SDEEAEPLAT SHRVKKFINE 360 IMIESSSTKT DSGVWRSRTT RMWRKKTGGK SGLPATCRTL KAQTTWKKFR GVKAQATKNK 420 FLGVRQRPWG KWAAEIREPH SGRRLWLGTF DTAEDAAMVY DKAAVLLRGP DTFTNFSTPQ 480 VANEDGNL

Sequence ? help Back to Top

Protein Sequence Length: 488 aa Download sequence

MGQDIIKQLK GMNGQAVPVG YGSPNSDAGH VVLGSSKRCS FQAQEKLSRP FVSLGQDVTN  60
RLKFKLKRME MRSLGYESPK DDARQVVLEA SRRGSFLQAP EKHAKTLDGT GQDGRAVPVG  120
LDSPKGDATH PVLEASKSCS FLQAPEKHAE MFDNTGHNGS PVPVGLDSRK GDARHLVLEL  180
PKSFRQAQKK RSKTLANRGQ DVTNKSKALD WNAVSFGCDS PKDDARHVVL EASKSFLQAH  240
EKHSKKLDNM GQDLTEKLKV KLKLKKGLHG RPVPVRDDGL KGDAGNLVLE ASKSLEQSIG  300
GLIDGGGNTE VDQHTQMETK SIKPRLVRIS VTDGDATESS SDEEAEPLAT SHRVKKFINE  360
IMIESSSTKT DSGVWRSRTT RMWRKKTGGK SGLPATCRTL KAQTTWKKFR GVKAQATKNK  420
FLGVRQRPWG KWAAEIREPH SGRRLWLGTF DTAEDAAMVY DKAAVLLRGP DTFTNFSTPQ  480
VANEDGNL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53290.1	9e-30	ERF family protein