PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0196571
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WRKY
Protein Properties Length: 223aa    MW: 25538.1 Da    PI: 9.665
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0196571genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.34.8e-31134191258
                             --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
                    WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                             +D ++WrKYGqK++kgs++prsYYrC+s+ gC+++k+vers+++p++++itY+ eHnh
  RcHm_v2.0_Chr7g0196571 134 SDVWAWRKYGQKPIKGSPYPRSYYRCSSSkGCSARKQVERSNSNPELFIITYTAEHNH 191
                             79*************************998**************************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    
MENWDLQAVV RGCKNNLEGL THTMEFSQSS CFGFAPVTIE EDDEIFQAFP QLFEATTALD  60
ELEELYKPFY PILQPISPPT IPIASVSVPQ EVTAEEKEPK KLKSVKESSP MSKRSRKNQS  120
KRVVQEVQEK DLFSDVWAWR KYGQKPIKGS PYPRSYYRCS SSKGCSARKQ VERSNSNPEL  180
FIITYTAEHN HVHPTRRNSL AGSTRTKFPK SQKKKRAKMS LCL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1212219QKKKRAKM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23550.13e-40WRKY family protein