PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr7g0196711

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB

Protein Properties

Length: 351aa MW: 39826.5 Da PI: 5.7496

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr7g0196711	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.4	2.8e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l+++++ +G g+W+ ++++ g+ R++k+c++rw +yl RcHm_v2.0_Chr7g0196711 14 RGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYL 61 788*******************************************97 PP
2	Myb_DNA-binding	53	7.7e-17	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr+T+eE++l++ ++ G++ W+ Ia++++ gRt++++k++w+++ RcHm_v2.0_Chr7g0196711 67 RGRFTPEEEKLIISLHGVVGNR-WAHIASHLP-GRTDNEIKNYWNSW 111 89******************.*****.**********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence
MGHHSCCNQQ KVKRGLWSPE EDEKLIRYIT THGYGCWSEV PEKAGLQRCG KSCRLRWINY 60 LRPDIRRGRF TPEEEKLIIS LHGVVGNRWA HIASHLPGRT DNEIKNYWNS WIKKKIRKPS 120 PPSSTSTTTS TTAPIAQMGY NDSTQQLDFV SQDYIASKPH AQDQTIFSST YPMFMFDTTA 180 IDQLAAENYN ARVELFQDMV SVGFSNPDVP WNLNQHQVQA LPPPPPPPAM DINYLPPLIE 240 NMDSMLPIID DHHHQVLQPN NCSNMDMEEG DHHHHQDQMA ELNEWVVSQQ QYSSSCPNFL 300 FWDEMNGVVD DHQEPGSINI VGEDHHNIIV PATSSTTGAN AVLLSSFPSS L

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence

MGHHSCCNQQ KVKRGLWSPE EDEKLIRYIT THGYGCWSEV PEKAGLQRCG KSCRLRWINY  60
LRPDIRRGRF TPEEEKLIIS LHGVVGNRWA HIASHLPGRT DNEIKNYWNS WIKKKIRKPS  120
PPSSTSTTTS TTAPIAQMGY NDSTQQLDFV SQDYIASKPH AQDQTIFSST YPMFMFDTTA  180
IDQLAAENYN ARVELFQDMV SVGFSNPDVP WNLNQHQVQA LPPPPPPPAM DINYLPPLIE  240
NMDSMLPIID DHHHQVLQPN NCSNMDMEEG DHHHHQDQMA ELNEWVVSQQ QYSSSCPNFL  300
FWDEMNGVVD DHQEPGSINI VGEDHHNIIV PATSSTTGAN AVLLSSFPSS L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G63910.1	5e-92	MYB family protein