PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0198391
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NF-YC
Protein Properties Length: 123aa    MW: 13381.3 Da    PI: 6.7859
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0198391genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC108.83.3e-34231031998
                   NF-YC  19 helPlarikkilk.adedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 
                             h+lPlarikki+k + edvkmis eaP+++skacelfi elt rsw  + + krrtl+k d+a+a+  tdifdflv +v +
  RcHm_v2.0_Chr7g0198391  23 HSLPLARIKKIMKkSGEDVKMISGEAPIVFSKACELFIEELTRRSWATTLQGKRRTLHKDDVASAIVATDIFDFLVSMVSE 103
                             99**********73579***********************************************************99976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    
MRQAGKYSGF MMCGGIAGRT GPHSLPLARI KKIMKKSGED VKMISGEAPI VFSKACELFI  60
EELTRRSWAT TLQGKRRTLH KDDVASAIVA TDIFDFLVSM VSETASHSED GTVPEEEETV  120
GSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.32e-35NF-YC family protein