PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr7g0198941

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

HSF

Protein Properties

Length: 346aa MW: 37887.2 Da PI: 4.7399

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr7g0198941	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	116.1	2.2e-36	26	117	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkk 88 Fl+k+ye+++d+e ++liswse g++f+v+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+kv ++ weF+++ Fk+ RcHm_v2.0_Chr7g0198941 26 FLTKTYELVDDPEADDLISWSEGGSTFIVWRPAEFARDILPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFANDCFKR 103 9***************************************************************99.........****** PP XXXXXXXXXXXXXX CS HSF_DNA-bind 89 gkkellekikrkks 102 g+k ll++i+r+k RcHm_v2.0_Chr7g0198941 104 GEKGLLREIQRRKI 117 *********985 PP

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence
MAALPDQNGD SASGGRESQR TIPTPFLTKT YELVDDPEAD DLISWSEGGS TFIVWRPAEF 60 ARDILPKYFK HNNFSSFVRQ LNTYGFRKVV PDRWEFANDC FKRGEKGLLR EIQRRKISPA 120 VSASAAAVVA AATVTAATLP PATASVSPAN SGDEQVISSN SSPMAVPAPT PTVALLPRTR 180 SCNTTAEILE ENERLRKENM QLSQELAQLR GLCNNILAMM TNYASGQLAR GGGAAAEDKR 240 PYPPPPVKKS QEGQKAAVSG GDKAEYSAGE EEMEEDQEEE TPPLLPIQTP KLFGVSIGVK 300 RVRRDEGEEE EDHERQNQGC DEVVKPEPSD GSSKHDKEAT WLELRK

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence

MAALPDQNGD SASGGRESQR TIPTPFLTKT YELVDDPEAD DLISWSEGGS TFIVWRPAEF  60
ARDILPKYFK HNNFSSFVRQ LNTYGFRKVV PDRWEFANDC FKRGEKGLLR EIQRRKISPA  120
VSASAAAVVA AATVTAATLP PATASVSPAN SGDEQVISSN SSPMAVPAPT PTVALLPRTR  180
SCNTTAEILE ENERLRKENM QLSQELAQLR GLCNNILAMM TNYASGQLAR GGGAAAEDKR  240
PYPPPPVKKS QEGQKAAVSG GDKAEYSAGE EEMEEDQEEE TPPLLPIQTP KLFGVSIGVK  300
RVRRDEGEEE EDHERQNQGC DEVVKPEPSD GSSKHDKEAT WLELRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G11660.1	3e-75	HSF family protein