PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0199251
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 241aa    MW: 27379.2 Da    PI: 4.9629
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0199251genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.53.2e-1869119155
                     AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             + y+GVr++  +++Wv+e+r+p   +k++r++lg++ t e+Aa+a++ a+++l+g
  RcHm_v2.0_Chr7g0199251  69 PVYRGVRRRN-NNKWVCEVREP---NKKTRIWLGTYPTLEMAARAHDVAALALRG 119
                             68*****887.8******9998...347*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    
MNSSNYQLSD SNQQSLESVS SIDKPESSSL SDTSFTTRRS PHSDGAVILA SSRPKKRAGR  60
RVFKETRPPV YRGVRRRNNN KWVCEVREPN KKTRIWLGTY PTLEMAARAH DVAALALRGK  120
QACLNFADSV WRLPIPASKD QLDIRRAAAE AAETFRPEEF GGVSSSCDDN EREYEDENVE  180
MDNEKKNDGF YEDEEGLFDM PRLLTSMAEG PLLSPPRHYL DSMNWADDQV DSESNFSLWS  240
F
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.12e-52ERF family protein