PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0199351
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 251aa    MW: 28672.7 Da    PI: 5.2688
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0199351genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.43.5e-1869119155
                     AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             + y+GVr++  +++Wv+e+r+p   +k++r++lg++ t e+Aa+a++ a+++l+g
  RcHm_v2.0_Chr7g0199351  69 PVYRGVRRRN-NNKWVCEVREP---NKKTRIWLGTYPTVEMAARAHDVAALALRG 119
                             68*****887.8******9998...347*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    
MNSSNYQLSD SNQKSLESVS SIDKPESSSL SDTSVPTRHS LHSDGAVILA SSWPKKRAGR  60
RVFKETRHPV YRGVRRRNNN KWVCEVREPN KKTRIWLGTY PTVEMAARAH DVAALALRGK  120
QACLNFADSA WRLPIPASKD QLDIRRAAAE AAETFRPEEF GGVSSSCDDN EIEHENENVE  180
MDNEKNDGFY EEREHENEKK NEDEEPLFDM PRLLTRMAEG PLLSPPRHSL DSMNWADYQV  240
ESEANFCLWS F
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12610.12e-49ERF family protein