PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0199381
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 242aa    MW: 27014.7 Da    PI: 5.6926
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0199381genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.92.1e-1769119155
                     AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             + y+GVr++  +++Wv+e+r+p   +k++r++lg++ tae+A +a++ a+++l+g
  RcHm_v2.0_Chr7g0199381  69 PVYRGVRRRN-NNKWVCEVREP---NKKTRIWLGTYPTAEMAGRAHDVAALALRG 119
                             68*****887.8******9998...347*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    
MNSNNQLSDS NHQSLESVSS IDKPETSALS DTCSVTTSRS THSDGEVILA SSRPKKRAGR  60
RVFKETRHPV YRGVRRRNNN KWVCEVREPN KKTRIWLGTY PTAEMAGRAH DVAALALRGK  120
QACLNFADSA WRLPVPASKD QLDIRRAAAE AAETFRPEEF GGVSSSCDDN EREHENEKAA  180
TDNEKENGFF EDDEAVFDMP RLLTNMAEGL LLSPPRHYLD GVNRGDDDVE SGSSLNLWSY  240
SI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25480.18e-70ERF family protein