PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0199781
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MIKC_MADS
Protein Properties Length: 226aa    MW: 25852.3 Da    PI: 5.5789
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0199781genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.35.4e-30959151
                            S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                  SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                            krien   rqvtfskRrng+lKKA+ELSvLCdaeva+iifs++gklye+ss
  RcHm_v2.0_Chr7g0199781  9 KRIENAASRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSTRGKLYEFSS 59
                            79***********************************************96 PP
2K-box70.16.8e-2480174598
                   K-box   5 sgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqee 90 
                             sgk+ +++ ++e  +++ + + k+ie +++++R+llG++Les+s+ eLqq+e+qLe+sl kiR++Kn +l+eqie +++ ek+l ++
  RcHm_v2.0_Chr7g0199781  80 SGKAvQDHDHMELANEDTSSMAKRIEFIESSKRKLLGDGLESCSIDELQQIENQLERSLAKIRDRKNLMLREQIELMKEEEKSLLKQ 166
                             5666345556666778899******************************************************************** PP

                   K-box  91 nkaLrkkl 98 
                             n +Lr+k 
  RcHm_v2.0_Chr7g0199781 167 NVELREKC 174
                             *****985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    
MVRGKTQMKR IENAASRQVT FSKRRNGLLK KAFELSVLCD AEVALIIFST RGKLYEFSSC  60
SSLNNTIDRF QKRVKDQGLS GKAVQDHDHM ELANEDTSSM AKRIEFIESS KRKLLGDGLE  120
SCSIDELQQI ENQLERSLAK IRDRKNLMLR EQIELMKEEE KSLLKQNVEL REKCGMQPIG  180
PPNNRGGGEE DEEDDVETES ETETMEVETE LFIGPPKRQR SSKKIP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22950.12e-66MIKC_MADS family protein