PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0201631
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family C2H2
Protein Properties Length: 367aa    MW: 42054.5 Da    PI: 9.9417
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0201631genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.22.9e-05126146323
                             ETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                             C  Cg++F +k+ L++H ++H
  RcHm_v2.0_Chr7g0201631 126 CRVCGRRFYTKEKLMNHFKLH 146
                             *****************9998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    
MVIHLKFRNF SFPIQSKRSE TLNPFTLFIR HCHFQSNPPF NSPYLAPPKI SQTSVAIFWD  60
LETKPPKSVT PFEAAGRLKT AASSFGLVRH MIAYANRHAF NSVPQVVGKI RKERNRVVIR  120
DEPNICRVCG RRFYTKEKLM NHFKLHEREH MKRLSQIESA RGSRRVKLVG KYSMKMEKYK  180
NAVRDVMIPK EGNCLVSEMK RAGFWVRSLA DKPQAGFVAL RNDILEMMDQ RRFECLVLVS  240
DDSDFVDVVM EARRRCVKTV AVGDLGDGAL KRAADSGFSW REILLGKAKK EAVAVVGKWK  300
DRDILKRLEW KYKPDEDRRV HSLDGGVDGE CEDEEIGSIV GGMNDNCLRS DDTGKWWELD  360
SDADAIS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.13e-90C2H2 family protein