PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0202031
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 278aa    MW: 31256.9 Da    PI: 4.7711
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0202031genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.97.1e-161461148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g+WT+eEd++l++ +   G  +W+++++  g++R++k+c++rw +yl
  RcHm_v2.0_Chr7g0202031 14 KGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLRRCGKSCRLRWTNYL 61
                            79********************************************97 PP
2Myb_DNA-binding53.84.6e-1770111447
                             S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              T+ E++l +d++++lG++ W++Ia++++ gRt++++k++w+++
  RcHm_v2.0_Chr7g0202031  70 LTESEEQLVIDLHARLGNR-WSKIAARLP-GRTDNEIKNHWNTH 111
                             69*****************.*********.************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    
MGRQPCCDKL GVKKGPWTAE EDKKLINFIL TNGQCCWRAV PKLAGLRRCG KSCRLRWTNY  60
LRPDLKRGLL TESEEQLVID LHARLGNRWS KIAARLPGRT DNEIKNHWNT HIKKKLLRMG  120
IDPVTHEPLH KDQDDLINKE TIISSHTNQA NNNLPQSTTE NSSSNSSPAE NSSSSSSPNE  180
NSSGDDQSTL IDSICNVDES LMNSLWVDET PLIDALWNSD QVPDGGDYIE NGMGVQSNWE  240
ENCSWLLDCQ DFGVHDFGMD CFIETELNAL DTLGMEKI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22680.12e-97MYB family protein