PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0202191
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 179aa    MW: 21030.2 Da    PI: 9.745
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0202191genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM183.84.1e-57211501129
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWk 84 
                             +ppGfrFhPtdeelv++yL+kk+++kk++l +vi++vd+yk+ePwdL++  k+ + +++ewyfFs++dkky+tg+r+nratk+g+Wk
  RcHm_v2.0_Chr7g0202191  21 VPPGFRFHPTDEELVDYYLRKKIASKKIDL-DVIRDVDLYKIEPWDLQElcKIGTeDQNEWYFFSHKDKKYPTGTRTNRATKAGFWK 106
                             69****************************.9***************954555552555**************************** PP

                     NAM  85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                             atg+dk+++  +++lvg++ktLvfykgrap+g+k+dW+mheyrle
  RcHm_v2.0_Chr7g0202191 107 ATGRDKAIYI-RHNLVGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 150
                             **********.899*****************************85 PP
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    
MFNYSCKICA GLKNMNTFSH VPPGFRFHPT DEELVDYYLR KKIASKKIDL DVIRDVDLYK  60
IEPWDLQELC KIGTEDQNEW YFFSHKDKKY PTGTRTNRAT KAGFWKATGR DKAIYIRHNL  120
VGMRKTLVFY KGRAPNGQKS DWIMHEYRLE TNENGPPQAS IFISLLTLQQ FLHALAFKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.11e-100NAC family protein