PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0202251
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family YABBY
Protein Properties Length: 230aa    MW: 25718.1 Da    PI: 8.4034
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0202251genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY229.21.1e-70141882170
                   YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaae.shldeslkeelleelkveeenlksnve 87 
                             d+   seq+Cyv+Cn C+t+lavsvP tslfk+vtvrCGhCt+ll vn++      + + +hl++s+  +   +++  ++++ +n +
  RcHm_v2.0_Chr7g0202251  14 DHLAPSEQLCYVHCNICDTVLAVSVPCTSLFKTVTVRCGHCTNLLPVNMRGLLLPSPNQfHHLGHSFFSQTNSHNNLLDQEIPMNPT 100
                             57789*****************************************98888776665543678888887755555555555555543 PP

                   YABBY  88 ......keesastsvssekl..senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPki 166
                                   +++s+ ++ +   +       +e+pr+p ++rPPekrqrvPsaynrfik+eiqrik+ nPdishreafsaaaknWahfP+i
  RcHm_v2.0_Chr7g0202251 101 pnflmnNQTSSLNDFA---VrpRGGVVDELPRPPVINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDISHREAFSAAAKNWAHFPHI 184
                             0000003333333333...2336677899***999**************************************************** PP

                   YABBY 167 hfgl 170
                             hfgl
  RcHm_v2.0_Chr7g0202251 185 HFGL 188
                             **97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    
MSSSNSAAST LSLDHLAPSE QLCYVHCNIC DTVLAVSVPC TSLFKTVTVR CGHCTNLLPV  60
NMRGLLLPSP NQFHHLGHSF FSQTNSHNNL LDQEIPMNPT PNFLMNNQTS SLNDFAVRPR  120
GGVVDELPRP PVINRPPEKR QRVPSAYNRF IKDEIQRIKS VNPDISHREA FSAAAKNWAH  180
FPHIHFGLMP DQNTVKKTNV RQQEAGEDVL MKDHNGFFAA ANNNVRVSPY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.14e-82YABBY family protein