PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0203911
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 228aa    MW: 25765.9 Da    PI: 9.0785
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0203911genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.41.8e-191562148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g+WT+eEd +l+++++ +G ++Wkt+a+  g++R++k+c++rw++yl
  RcHm_v2.0_Chr7g0203911 15 KGAWTAEEDRKLAEYIEIHGAKRWKTVASIAGLNRCGKSCRLRWLNYL 62
                            79********************************************97 PP
2Myb_DNA-binding50.83.7e-1668113148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                             rg+ + +E++l+++++k+lG++ W++Ia +++ gRt++++k++w+++l
  RcHm_v2.0_Chr7g0203911  68 RGNISDDEEDLILRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 113
                             78999*****************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    
MAPKNDGSTK KVMNKGAWTA EEDRKLAEYI EIHGAKRWKT VASIAGLNRC GKSCRLRWLN  60
YLRPNIKRGN ISDDEEDLIL RLHKLLGNRW SLIAGRLPGR TDNEIKNYWN SHLSKKIKQK  120
NEKATLASAA QETSTTSTTT TTPPQKALNE TSSVPADKDE EERVKLGTSS DGNFDVNEFF  180
DFSTEGSYGL EWVNKFLELD EDPMAAAYRE NNKAMPKESQ SQHKSKCP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40330.16e-54MYB family protein