PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0203971
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 223aa    MW: 24758.2 Da    PI: 4.9102
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0203971genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.33.9e-1859107355
                     AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a++ ++g
  RcHm_v2.0_Chr7g0203971  59 YRGVRMRQ-WGKWVSEIREPRK---KSRIWLGTFETPEMAARAHDVAALTIKG 107
                             9****998.**********843...6**********************99887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    
MEEEQSTTAT SSSGSTTSAQ CEAGKISKRV KKQQVVENGS EKRAKSDGSE EGSKQHPMYR  60
GVRMRQWGKW VSEIREPRKK SRIWLGTFET PEMAARAHDV AALTIKGRSA YLNFPELAKE  120
LPRPDSSSPK DIQAAAAKAA AISYPNCSSS HEAEEAQPAQ DSSTSPISDD HNDDTFYDLP  180
DLLLDVGQYH GDHEYYFPVV TWQLGGADPI DTSLRMEESF LWD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.12e-51ERF family protein