PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0204031
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 179aa    MW: 19929.3 Da    PI: 7.949
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0204031genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.56.7e-182876355
                     AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                            y+GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a++ ++g
  RcHm_v2.0_Chr7g0204031 28 YRGVRMRQ-WGKWVSEIREPRK---KSRIWLGTFSTAEMAARAHDVAALTIKG 76
                            9****998.**********843...6**********************99887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    
MESARTQKGE RKRVSNGSEE GCKQKPMYRG VRMRQWGKWV SEIREPRKKS RIWLGTFSTA  60
EMAARAHDVA ALTIKGRSAY LNFPELAQEL PCAASSLPKD IQAAAAKAAA LSYPSCSSSR  120
SHESKTEPAQ DSSSSSKNED DSFFNLPDLL LDVGNYRSTH ECFSLVDASF SIEEPFLWD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16750.13e-50ERF family protein