PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0204641
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 292aa    MW: 29878.9 Da    PI: 4.6919
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0204641genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.72.8e-131551951355
                     AP2  13 grWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             g+++AeIrdp +ng  +r++lg+f tae+Aa a+++a+ +++g
  RcHm_v2.0_Chr7g0204641 155 GKFAAEIRDPAKNG--ARVWLGTFETAEDAALAYDRAAYRMRG 195
                             89********9987..*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    
MYGQSGSDAD FTLLDSIRRH LLGGENNNHN PVTNSGAGPI FSRSSSFSSL YSCLTDNWGE  60
LPLKENDSED MVLYGVLRDA VSVGWVPSLG SGCGSADGCG FEFAVKSEPC SFDFERAGDE  120
FGRGGGDSAV GSGQAGGGGG AEGEALQGSE AAAVGKFAAE IRDPAKNGAR VWLGTFETAE  180
DAALAYDRAA YRMRGSRALL NFPLRVNSGE PDPVRVTSKR SSPEPASSSE SGSPKRRKKA  240
AAAVATATAT AVQAGLEMGS GIGIGIGIGI GQQQVGGQVG VSCTRGEQLL VV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.13e-45ERF family protein