PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0205051
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family M-type_MADS
Protein Properties Length: 135aa    MW: 15153.7 Da    PI: 8.743
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0205051genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF81.55.3e-2669117149
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                  SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 
                             ++ien   rqvtfskRr+g++KKAe LSvLCdaevav++fsstgklye 
  RcHm_v2.0_Chr7g0205051  69 EKIENLPARQVTFSKRRQGLFKKAEALSVLCDAEVAVVVFSSTGKLYES 117
                             579********************************************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    
MYNRVCIIGR PIAATPVSFL GKQFFPFLGV YYFTSISACC QLWRDPKLQF LHHEAIIEQL  60
AAMNKIKIEK IENLPARQVT FSKRRQGLFK KAEALSVLCD AEVAVVVFSS TGKLYESSSS  120
RSSLCAQLEE DISAI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.11e-23MIKC_MADS family protein