PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr7g0205311

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

GATA

Protein Properties

Length: 537aa MW: 59873.1 Da PI: 7.3323

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr7g0205311	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	49.9	4.3e-16	7	41	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+t+TplWR+gp ++ LCnaCG ++r kg+ RcHm_v2.0_Chr7g0205311 7 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41 **************88888*********997 PP

Sequence ? help Back to Top
Protein Sequence Length: 537 aa Download sequence
MGKQGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLVNYTPLHA RAEPEDYEDH 60 RVSRMKSMSI NKNKEVKLVK RKQHPDSVVV GADYSHGFRK VVDEDTSNRS SSGSAVSNTE 120 SCAHFGSADA SDLTGPAQSM VWDSTVPSRK RTCVGRPKQS PVEKLTKDLY TILHEQQSSY 180 FSGSSEEDLL FESETPMVSV EIGHGSVLIR HPSSIAREEE SEASSLSVDN RQCHINEAYS 240 HSASLFVHNN KGVNMSSTVI GKMNSPAGQG MQQEPLKRDK SQHDNFQILG NHNSPLHHID 300 LNDIVNYEEF MRQLTNEEQQ QLLKHLSPVD VKFPYSLRNM FDSPQFRENL TSFQQLLAEG 360 VFDISFPGAK TEDCKTLKRL ALSNSLKSKW VERYHLIKCK TTSGKSVVSG SNFTTSSNFR 420 QVKRLRDSET RSFPDVKIVM KSPKRVIMKG GYENKDILDY DGSCFSPKSL FALPPDGSSL 480 MLDSMSFVEE SSDQDLLLDI PSNGSYPQAE LLHPALSFGS QQASTSSSSI YPHLLHP

Sequence ? help Back to Top

Protein Sequence Length: 537 aa Download sequence

MGKQGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLVNYTPLHA RAEPEDYEDH  60
RVSRMKSMSI NKNKEVKLVK RKQHPDSVVV GADYSHGFRK VVDEDTSNRS SSGSAVSNTE  120
SCAHFGSADA SDLTGPAQSM VWDSTVPSRK RTCVGRPKQS PVEKLTKDLY TILHEQQSSY  180
FSGSSEEDLL FESETPMVSV EIGHGSVLIR HPSSIAREEE SEASSLSVDN RQCHINEAYS  240
HSASLFVHNN KGVNMSSTVI GKMNSPAGQG MQQEPLKRDK SQHDNFQILG NHNSPLHHID  300
LNDIVNYEEF MRQLTNEEQQ QLLKHLSPVD VKFPYSLRNM FDSPQFRENL TSFQQLLAEG  360
VFDISFPGAK TEDCKTLKRL ALSNSLKSKW VERYHLIKCK TTSGKSVVSG SNFTTSSNFR  420
QVKRLRDSET RSFPDVKIVM KSPKRVIMKG GYENKDILDY DGSCFSPKSL FALPPDGSSL  480
MLDSMSFVEE SSDQDLLLDI PSNGSYPQAE LLHPALSFGS QQASTSSSSI YPHLLHP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17570.3	1e-158	GATA family protein