PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr7g0205441

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 197aa MW: 22545.2 Da PI: 5.1077

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr7g0205441	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	122.8	2.9e-38	8	127	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 lppGfrF Ptdeelvv++L++k++ +l+ +vi+++d+y ++Pw+L+ k+ +e k+wyf+s+r +nr+t+sgyWk g RcHm_v2.0_Chr7g0205441 8 LPPGFRFFPTDEELVVHFLQRKAALLPLHP-DVIPDLDLYPYDPWELNGKALSEGKQWYFYSRRT--------QNRVTSSGYWKLLG 85 79***********************999.99**********97777889***984........58******** PP NAM 88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++v+s+ +++++g+k+ + fy g+ap+g kt+W+mheyrl RcHm_v2.0_Chr7g0205441 86 TEEPVISStSNNKIGIKRYFGFYVGKAPSGIKTNWTMHEYRL 127 *99877888*************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence
MADNPFQLPP GFRFFPTDEE LVVHFLQRKA ALLPLHPDVI PDLDLYPYDP WELNGKALSE 60 GKQWYFYSRR TQNRVTSSGY WKLLGTEEPV ISSTSNNKIG IKRYFGFYVG KAPSGIKTNW 120 TMHEYRLSAV SDTCASSSTP RSSKRRGHRK AVNEYSGYVL CRVYERGEDE DDDGTELSCL 180 DEVFLSLDDL DEISLPN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	2e-73	NAC family protein