PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr7g0205761

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

Trihelix

Protein Properties

Length: 250aa MW: 28370.9 Da PI: 10.6396

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr7g0205761	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	53.2	7.5e-17	14	102	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 +Wt++e +aLi + ++++++l+r++lk+++W++v++ + ++++ qC +k+e+l+kry+ +k++++ r +++ s +++++ RcHm_v2.0_Chr7g0205761 14 CWTDDEAQALISVFKDKWSSLGRTNLKANDWDDVAATLaaqfPLVSPSKTAAQCHNKIEKLRKRYRSEKQRASTR-PGRFSPWALYR 99 8***********************************5443334558999********************98.78888999999 PP trihelix 84 qle 86 +e RcHm_v2.0_Chr7g0205761 100 FME 102 887 PP

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence
MSSPTPRRRF PPLCWTDDEA QALISVFKDK WSSLGRTNLK ANDWDDVAAT LAAQFPLVSP 60 SKTAAQCHNK IEKLRKRYRS EKQRASTRPG RFSPWALYRF MEELEGESGK KPIHTARKGH 120 RNLAPLFNPK MKLKKNESSG FLRKFGGVES SGVGVNDLGG SSGLLRSVRE VDPVEEMVSS 180 IQLLGEKYMK VEKRKMEMAR EIVMMQMDME MKQTQVIMES QQQIVNACVS ALLDSKKKKK 240 RKMKALSTDS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	236	242	KKKKKRK
2	236	243	KKKKKRKM
3	237	242	KKKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	1e-27	Trihelix family protein