PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr7g0209171

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 345aa MW: 39210.4 Da PI: 5.8103

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr7g0209171	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	170	7.5e-53	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWka 85 lppGfrFhPtdeelv +yL +k+eg ++el evi+ +d+yk++Pw+Lp k + ++ ew+fF++rd+ky++g+r+nratk+gyWka RcHm_v2.0_Chr7g0209171 6 LPPGFRFHPTDEELVGYYLSRKLEGLEFEL-EVIPVIDLYKFDPWELPeKsFLPRRDMEWFFFCPRDRKYPNGSRTNRATKAGYWKA 91 79**************************.99**********95334455788************************* PP NAM 86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 tgkd++v++ +++++g +ktLvfy+grap g +t+W+mheyrl RcHm_v2.0_Chr7g0209171 92 TGKDRKVVC-QSSVTGYRKTLVFYRGRAPLGDRTEWIMHEYRL 133 *****.9999*************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence
MGGASLPPGF RFHPTDEELV GYYLSRKLEG LEFELEVIPV IDLYKFDPWE LPEKSFLPRR 60 DMEWFFFCPR DRKYPNGSRT NRATKAGYWK ATGKDRKVVC QSSVTGYRKT LVFYRGRAPL 120 GDRTEWIMHE YRLNDDFAQG SPGHQGVFAL CRVVKKKEHT QKANDSNGEP KAKTTGSTSS 180 NGDLTSTRNS NETLSISAGM SSQVNYQHDE SRHSSHTTSP YEVSPMAEFE PAPRGTNPAD 240 FWISPDLILD SSKDYPQLQG AVANYFPQYE FPSTMSPWQS YEHTEISPSS SYSNFGDFQM 300 AEDMNQMASM SPFSGHTDYM GYCGNEGLQF EGFDQTSTVR YPNHF

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence

MGGASLPPGF RFHPTDEELV GYYLSRKLEG LEFELEVIPV IDLYKFDPWE LPEKSFLPRR  60
DMEWFFFCPR DRKYPNGSRT NRATKAGYWK ATGKDRKVVC QSSVTGYRKT LVFYRGRAPL  120
GDRTEWIMHE YRLNDDFAQG SPGHQGVFAL CRVVKKKEHT QKANDSNGEP KAKTTGSTSS  180
NGDLTSTRNS NETLSISAGM SSQVNYQHDE SRHSSHTTSP YEVSPMAEFE PAPRGTNPAD  240
FWISPDLILD SSKDYPQLQG AVANYFPQYE FPSTMSPWQS YEHTEISPSS SYSNFGDFQM  300
AEDMNQMASM SPFSGHTDYM GYCGNEGLQF EGFDQTSTVR YPNHF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17980.1	1e-109	NAC family protein