PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr7g0209241

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

LSD

Protein Properties

Length: 149aa MW: 15493 Da PI: 7.9166

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr7g0209241	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	42.2	1.3e-13	32	56	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL YP GA+sV+Ca+C++V RcHm_v2.0_Chr7g0209241 32 CSGCRNLLLYPVGATSVCCAVCNAV 56 ************************9 PP
2	zf-LSD1	46.7	5e-15	71	95	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+tV RcHm_v2.0_Chr7g0209241 71 CGGCHTLLMYIRGATSVQCSCCHTV 95 ************************9 PP
3	zf-LSD1	41.8	1.7e-13	109	133	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+Y +GA+sV+Ca+C++V RcHm_v2.0_Chr7g0209241 109 CGNCRMLLMYQYGARSVKCAVCNFV 133 ***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 149 aa Download sequence
MPVPLAPYPT PPAPYTPPAT AATNGAQSQL VCSGCRNLLL YPVGATSVCC AVCNAVTAVP 60 PPGTEMAQLV CGGCHTLLMY IRGATSVQCS CCHTVNLALE ANQVAHVNCG NCRMLLMYQY 120 GARSVKCAVC NFVTSVGVST STTEQKFTN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.3	2e-60	LSD family protein