PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr7g0209451

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 241aa MW: 26453.3 Da PI: 6.1441

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr7g0209451	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.3	0.00012	68	90	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H RcHm_v2.0_Chr7g0209451 68 YTCTFCRREFRSAQALGGHMNVH 90 9********************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence
MAELGLLSLT QLQKLALSQA QNPQSNPRSV WMWNPKQAQD QEDDSWEVRA FAEDTGNVMG 60 TTWPPRSYTC TFCRREFRSA QALGGHMNVH RRDRARLHQV QHPSSISINP SAVSSSSSSF 120 IIPTQEFIAA NGGLCLLYQL PNPNNGTFST STATTPTAPL LNNTIESSSS VPSTLLSITP 180 NPPHDYLMTS SSCLVEPHGV SNSRNNSHCQ YAKRSADQDQ PSRSGVEDIE ELDLELRLGP 240 S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17810.1	1e-34	C2H2 family protein