PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr7g0210101

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 320aa MW: 35626.6 Da PI: 7.4652

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr7g0210101	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	46.1	8.7e-15	108	159	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ ++++ + a+i+ A+e++k+L+ RcHm_v2.0_Chr7g0210101 108 QRMTHIAVERNRRKQMNEHLAILRSLMPES---YAQRGDQASIVGGAIEFVKELE 159 79**************************...*****************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence
MALEAISSNE PFNFIIYDTI SATSYSCQDS PAVAETSFLL ENCATTTTPT IKEAGAQDQN 60 QSGIVALESC TTLGTRSRSL TSVTQQQGRK KRKRKPRVCK NKEEAETQRM THIAVERNRR 120 KQMNEHLAIL RSLMPESYAQ RGDQASIVGG AIEFVKELEH LLLSLEAQKL QLQQSKVVNE 180 DSSTTSNSKV VQPIITPFLQ FSEYDISQGQ SSWSQQQSPN KFTSKTKADI ADIEVTLIET 240 HANLRIVTRR ITPRQLSKLV AGVQTLQLTI LHLTVNTIYP FVLYSISVKI EEGCLLTSVD 300 DIAAAFYHML RVIEEAAALC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	89	94	RKKRKR
2	89	95	RKKRKRK
3	90	95	KKRKRK
4	109	120	RMTHIAVERNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	2e-56	bHLH family protein