PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0210281
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 331aa    MW: 36572.9 Da    PI: 6.2504
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0210281genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.23.8e-181562148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g+WTteEd++lvd+++  G g+W++ ++  g++R++k+c++rw +yl
  RcHm_v2.0_Chr7g0210281 15 KGPWTTEEDQKLVDYINTNGHGSWRALPKLAGLNRCGKSCRLRWTNYL 62
                            79********************************************97 PP
2Myb_DNA-binding51.81.9e-1668113148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                             rg++++eE+  ++++++  G++ W++Ia +++ gRt++++k++w+++l
  RcHm_v2.0_Chr7g0210281  68 RGKFSEEEERVIINLHAVVGNK-WSKIATHLP-GRTDNEIKNFWNTHL 113
                             89********************.*********.************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    
MGRSPCCDDQ SGLKKGPWTT EEDQKLVDYI NTNGHGSWRA LPKLAGLNRC GKSCRLRWTN  60
YLRPDIKRGK FSEEEERVII NLHAVVGNKW SKIATHLPGR TDNEIKNFWN THLRKKLLQM  120
GLDPNTHKPR TDLNHLLNLS QLLSTANVGN MMTSTPWDNA LRLQASAAQL AKMQLLQNLY  180
MQVINSSVAP DIDNKTSTGL FGSQNINLFG GNFSGASTMV GGQEWNPDSI PGAPNELNTI  240
SNSLEGFEGL NSNINTNLMS SCYDIQSFKN QFAELVSASS PGSSTTNNQI ESTSTGDIPA  300
AGQSSPTSIF EAWEKLMDDD TSESYWKDIL Q
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17785.12e-85MYB family protein