PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0211251
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 428aa    MW: 48486.6 Da    PI: 4.1614
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0211251genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM675.5e-2191432128
                     NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpkkvka.......eekewyfFskrdkkyatgkrknratk 79 
                              pG rF P d+elv +yLk+ ++g++++  +  + ++d+y   ePw++ +++k+        +k++yfF++++k ++t+kr +r + 
  RcHm_v2.0_Chr7g0211251   9 LPGQRFCPMDDELVLFYLKPMLSGQNVPGRSRvVFDCDLYGQqEPWEIWEAFKTrrphdlrLNKDIYFFTQHKKMSSTDKRVRRNVG 95 
                             59************************7775443999**996549****753333223333334588********************* PP

                     NAM  80 sgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                             sg+Wk   + k+v s  +g +vglkk  ++ +  + + ++  W++ e+ l
  RcHm_v2.0_Chr7g0211251  96 SGTWKGDDSGKPVRSVdSGCVVGLKKRYTYKN--EDSVHNGCWILYEFYL 143
                             *****9999999998867788********984..4555699******976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    
MEESRGNQLP GQRFCPMDDE LVLFYLKPML SGQNVPGRSR VVFDCDLYGQ QEPWEIWEAF  60
KTRRPHDLRL NKDIYFFTQH KKMSSTDKRV RRNVGSGTWK GDDSGKPVRS VDSGCVVGLK  120
KRYTYKNEDS VHNGCWILYE FYLDRSLRDK KQKVKDCVLC LLRKNGEPKT KIEKKRKQRE  180
EEQFLENNYA CDDGENSNRE QEVLLEPQAK RQRTVPSIDN APPTMPSEDD AAFAAELEES  240
LECSEDDNAP SSEAEAVGLQ GEENGGLQKL ASEGQSSGPS FVDDYGIFNQ LPEEDFLWEE  300
MVEEMGTVEK EEPVLNGVSS NIDVDEDNAV NSTLLYAPTS SMSVASDGCT EMPYLSENCC  360
IDPSGSNNVC GGSIGLQDAA YWLESLVEVP IDEQQKTADE DCSDWLESMI NFSPEENNFL  420
WSEMQWCS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1168177PKTKIEKKRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.21e-14NAC family protein