PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr7g0211291

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

HSF

Protein Properties

Length: 525aa MW: 57118.4 Da PI: 4.5348

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr7g0211291	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	115.3	3.8e-36	49	140	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkk 88 Fl+k+y++++d++++ ++sws+++nsfvv+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F + RcHm_v2.0_Chr7g0211291 49 FLSKTYDMVDDPATDPIVSWSATNNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLR 126 9******************999*************************************999.........****** PP XXXXXXXXXXXXXX CS HSF_DNA-bind 89 gkkellekikrkks 102 g+k+ll++i+r+k RcHm_v2.0_Chr7g0211291 127 GQKHLLKSINRRKP 140 *********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 525 aa Download sequence
MAGANSNADE APAGGGAQPA QAAAAAAGGG LESAPAPTPL LNSNAPPPFL SKTYDMVDDP 60 ATDPIVSWSA TNNSFVVWNP PEFARDLLPK YFKHNNFSSF VRQLNTYGFR KVDPDRWEFA 120 NEGFLRGQKH LLKSINRRKP AHGHGHQQPQ QPSHGQSSVA ACVEVGKFGL EEEVERLKRD 180 KNVLMQELIR LRQQQQSTDN QLQTMVQRLQ GMEQRQQQMM SFLAKAVQSP GFLNQFVQQK 240 NDSNRRITEA NKKRRLREEG IAENERSDTP DGQIVKYQPP MNEAAKAMLR QMMKTNTSSQ 300 LDSFSNNLEN FLIGEGSSSS SAVDSGSSSS HVSGATLQEV PPTSGRGPLP AISEIESSLK 360 ATTSGEVMRD PLSDINVLIG AQEAPALPIS QADVIPEVSQ VQGMAHGGLI DIPEGNTKPE 420 ADVGFIQDMA PEAGDGFIDS TAFDFMSLDV DSFPPDADID ALLDNSNLWD FLEQSPVPDE 480 MDSTSAEGMP VGNEVQPTEN GWDKTQHMDK LTEQMGNLKS NTKGV

Sequence ? help Back to Top

Protein Sequence Length: 525 aa Download sequence

MAGANSNADE APAGGGAQPA QAAAAAAGGG LESAPAPTPL LNSNAPPPFL SKTYDMVDDP  60
ATDPIVSWSA TNNSFVVWNP PEFARDLLPK YFKHNNFSSF VRQLNTYGFR KVDPDRWEFA  120
NEGFLRGQKH LLKSINRRKP AHGHGHQQPQ QPSHGQSSVA ACVEVGKFGL EEEVERLKRD  180
KNVLMQELIR LRQQQQSTDN QLQTMVQRLQ GMEQRQQQMM SFLAKAVQSP GFLNQFVQQK  240
NDSNRRITEA NKKRRLREEG IAENERSDTP DGQIVKYQPP MNEAAKAMLR QMMKTNTSSQ  300
LDSFSNNLEN FLIGEGSSSS SAVDSGSSSS HVSGATLQEV PPTSGRGPLP AISEIESSLK  360
ATTSGEVMRD PLSDINVLIG AQEAPALPIS QADVIPEVSQ VQGMAHGGLI DIPEGNTKPE  420
ADVGFIQDMA PEAGDGFIDS TAFDFMSLDV DSFPPDADID ALLDNSNLWD FLEQSPVPDE  480
MDSTSAEGMP VGNEVQPTEN GWDKTQHMDK LTEQMGNLKS NTKGV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32330.1	1e-142	HSF family protein