PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0212081
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family M-type_MADS
Protein Properties Length: 169aa    MW: 19668.8 Da    PI: 4.9145
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0212081genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF56.14.8e-18957149
                            S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                  SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                            k+i+nk   + tfskRr+g++ KA EL+ +C+ae+a++ +s+ gk+y +
  RcHm_v2.0_Chr7g0212081  9 KKINNKAYLKATFSKRRKGLFRKAAELCHMCGAEIAILTVSPGGKFYNF 57
                            6899*******************************************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    
MGRRKIEIKK INNKAYLKAT FSKRRKGLFR KAAELCHMCG AEIAILTVSP GGKFYNFGHP  60
YVDSIIARYC GDETSCTLHE NHECVSHEDD DEDLEGGQEK EEGSTDDVDE DEPIHEKSHK  120
FWWDEEEPID PEQREMFSHS LQELRNNAVW VLNDRNRRES YVKDYMGGI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145158RNNAVWVLNDRNRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-21M-type_MADS family protein