PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0212961
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family G2-like
Protein Properties Length: 288aa    MW: 32694.7 Da    PI: 7.6258
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0212961genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like105.92.3e-332983155
                 G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                            kprlrWtp+LH+rFv+av++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl
  RcHm_v2.0_Chr7g0212961 29 KPRLRWTPDLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRL 83
                            79****************************************************8 PP
2Myb_DNA-binding68.51.1e-213182148
                            TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48
                            r+rWT+++++++vdav++lGg+   t+k++ r mg kg+tl+++ks++qky+
  RcHm_v2.0_Chr7g0212961 31 RLRWTPDLHDRFVDAVTKLGGPdkaTPKSVLRLMGlKGLTLYHLKSHLQKYR 82
                            89*************************************************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    
MEMNYNYGSG GQEISCPYEN GVMMTRDPKP RLRWTPDLHD RFVDAVTKLG GPDKATPKSV  60
LRLMGLKGLT LYHLKSHLQK YRLGQQSRKQ NSAEQGRENN GDSFVHFSNH HSTGSTAKSS  120
RGNAEQGTIP LSEELKCQIE VQNRLQEQLE VQKKLQMRIE AQGKYLQTIL EKAQKGLSID  180
MKGPITAEAT RAQLTDFNLA LSNFMENMSE EERRVNIIEM NEAYKKSNGS TFQIYEEGNI  240
GEENKDSKLK VERGSIHFDL NTKGSYDYVG TNGTEFEPRC FRLQDSSL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45580.16e-78G2-like family protein