PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0214071
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family E2F/DP
Protein Properties Length: 118aa    MW: 13188.3 Da    PI: 11.1647
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0214071genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP50.92.6e-1625872071
                 E2F_TDP 20 see.givtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71
                             +  + ++l+e+a+ L+ +      +++k+RRiYDi+NV +++nliek     ++k++++w g
  RcHm_v2.0_Chr7g0214071 25 RKMvESISLDEAARLLLGDahntsVMRTKVRRIYDIANVSSSMNLIEKthavdTRKPAYKWLG 87
                            445689*****************999***********************************87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    
MMRVVMQPGV RMRTPVSIPN LQETRKMVES ISLDEAARLL LGDAHNTSVM RTKVRRIYDI  60
ANVSSSMNLI EKTHAVDTRK PAYKWLGLRG KDATSSASDE SRKRAFGTDI TNVVRGAK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.11e-40E2F/DP family protein