PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr7g0215711

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

WOX

Protein Properties

Length: 191aa MW: 22001.1 Da PI: 9.3252

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr7g0215711	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.5	2.7e-19	86	146	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ qle+Le+ + + n +p +++ +e++ +l ++te++V++WFqNrRa+ k+ RcHm_v2.0_Chr7g0215711 86 RQRWTPTSLQLEILERIYDEaNGTPGKHRVKEITIELsqhgQVTETNVYNWFQNRRARSKR 146 89***************99************************************97 PP
2	Wus_type_Homeobox	93.7	1.6e-30	85	148	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPt+ Q++iLe++y+++ tP k+++++it eL+++G+++++NV++WFQNr+aR+++kq RcHm_v2.0_Chr7g0215711 85 ARQRWTPTSLQLEILERIYDEANGTPGKHRVKEITIELSQHGQVTETNVYNWFQNRRARSKRKQ 148 789***********************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence
MEGQRRVLAM KMEKLKTQNP DGFCRKVMTD DQVEQLRKQI AVYAVICEQL VDMHKAFTAQ 60 QDLSGMKMGS VYGDLMASGG SKVTARQRWT PTSLQLEILE RIYDEANGTP GKHRVKEITI 120 ELSQHGQVTE TNVYNWFQNR RARSKRKQSV PARNITESDL EPEVISPKDK KTKPEDMYFQ 180 SPDSGYENLK W

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	140	148	RRARSKRKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	1e-60	WOX family protein