PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr7g0216521

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 404aa MW: 44886.3 Da PI: 6.9164

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr7g0216521	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	171.8	2.1e-53	23	150	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 lppGfrFhPtdeel+++yL+ kv + + i+evd++++ePw+Lp +k ++kewyfFs rd+ky+tg r+nrat +gyWkatg RcHm_v2.0_Chr7g0216521 23 LPPGFRFHPTDEELITFYLASKVYNGAFCG-VDIAEVDLNRCEPWELPDVAKMGDKEWYFFSLRDRKYPTGLRTNRATGAGYWKATG 108 79***********************877.34***********888889***************************** PP NAM 88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 kdkev+s+ +g+l g+kktLvfykgrap+g+kt+Wvmheyrl RcHm_v2.0_Chr7g0216521 109 KDKEVYSAsSGALLGMKKTLVFYKGRAPRGQKTKWVMHEYRL 150 **9978889*************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence
MLGLMEEVMS ELMGREELNE QGLPPGFRFH PTDEELITFY LASKVYNGAF CGVDIAEVDL 60 NRCEPWELPD VAKMGDKEWY FFSLRDRKYP TGLRTNRATG AGYWKATGKD KEVYSASSGA 120 LLGMKKTLVF YKGRAPRGQK TKWVMHEYRL DGDFSSYRHT CKDEWVICRI HNKSGDKKNP 180 LQAQGQGEGQ QSNFLQQVVE AASASASSKT GCLPPLLECQ SQTTHQNHSF LQSPSLLQIQ 240 ENDLMKSRNQ LFQQPSLSSS SSSSAAALHS MLFKSLLYSH QDQAGTGSSA PKQCKAEAAN 300 LSQFQTPPLN AANFNYLMEK NHSHHQPNVP DSLLQFHHHP RNALSFDDFH YYNGVLGLST 360 SATAAVDAET SSASIGGFNR AGFQTMLDPL IKLPAAESWN LDIA

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence

MLGLMEEVMS ELMGREELNE QGLPPGFRFH PTDEELITFY LASKVYNGAF CGVDIAEVDL  60
NRCEPWELPD VAKMGDKEWY FFSLRDRKYP TGLRTNRATG AGYWKATGKD KEVYSASSGA  120
LLGMKKTLVF YKGRAPRGQK TKWVMHEYRL DGDFSSYRHT CKDEWVICRI HNKSGDKKNP  180
LQAQGQGEGQ QSNFLQQVVE AASASASSKT GCLPPLLECQ SQTTHQNHSF LQSPSLLQIQ  240
ENDLMKSRNQ LFQQPSLSSS SSSSAAALHS MLFKSLLYSH QDQAGTGSSA PKQCKAEAAN  300
LSQFQTPPLN AANFNYLMEK NHSHHQPNVP DSLLQFHHHP RNALSFDDFH YYNGVLGLST  360
SATAAVDAET SSASIGGFNR AGFQTMLDPL IKLPAAESWN LDIA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76420.1	1e-102	NAC family protein