PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr7g0219251

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C3H

Protein Properties

Length: 248aa MW: 27494.7 Da PI: 8.2247

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr7g0219251	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.9	2.7e-06	183	209	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt lC +++ +G+C+ d CkFaHg+ RcHm_v2.0_Chr7g0219251 183 PKTQLCLNWQDSGYCRCKDHCKFAHGM 209 79***********************95 PP
2	zf-CCCH	19.3	2e-06	221	245	1	25
--S---SGGGGTS.--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartG.tCkyGdrCkFaH 25 ykt+ C+++++ G C +G rC+F H RcHm_v2.0_Chr7g0219251 221 YKTKVCKYWLA-GvPCGFGHRCHFRH 245 9********.66********88 PP

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence
MFHYIIVHFW IGNAHGGVVA TNPIQASVGN AHGGVAATNP IQASFGKLVN KDNAIKVEKL 60 RPDMSDVTLT VKVVSTKIVG IQFAECLVGD ETGMIIFRAT NDQVDLMKVS LTVTLQNAKV 120 DMFKDSMRLV VDESGSVQVA EPAGFTVKED SNLSLIQASF GNVNKDQKKE GPRELEVYEQ 180 GMPKTQLCLN WQDSGYCRCK DHCKFAHGME ELRPVNRHPL YKTKVCKYWL AGVPCGFGHR 240 CHFRHTLT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66810.1	6e-31	C3H family protein