PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0220421
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family E2F/DP
Protein Properties Length: 87aa    MW: 9707.57 Da    PI: 9.0646
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0220421genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP43.45.6e-1424771562
                 E2F_TDP 15 klleksee.givtlnevakeLvse.....dvknkrRRiYDilNVLealnliekk 62
                            +ll ks+  + ++l+e+a+ L+ +      ++ k+RRiYDi+NV +++nliek 
  RcHm_v2.0_Chr7g0220421 24 QLLGKSRVvESISLDEAARLLLGDahnasVMRSKVRRIYDIANVSSSMNLIEKV 77
                            56667777799*****************99999********************4 PP
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    
MADWGPVVIM VVLFILLSPG LLFQLLGKSR VVESISLDEA ARLLLGDAHN ASVMRSKVRR  60
IYDIANVSSS MNLIEKVKLV EHVIEKY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.11e-19E2F/DP family protein