PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr7g0220861

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 372aa MW: 42551.3 Da PI: 6.789

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr7g0220861	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.3	0.0005	79	101	3	23
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 C+ Cgk+F + L++H H RcHm_v2.0_Chr7g0220861 79 CSyeGCGKTFIDAGALRKHSHIH 101 77779**************7766 PP
2	zf-C2H2	16.5	2.4e-05	106	130	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+C+ Cgk F ++s LkrH H RcHm_v2.0_Chr7g0220861 106 YVCHyeGCGKKFLDSSKLKRHFLIH 130 9********************8877 PP
3	zf-C2H2	21.7	5.3e-07	136	160	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++Cp Cgk Fs nL++H++tH RcHm_v2.0_Chr7g0220861 136 FVCPheGCGKAFSLDFNLRSHMKTH 160 89**********************9 PP
4	zf-C2H2	15.8	4e-05	166	190	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 + Cp Cgk++ + + Lk+Hi++H RcHm_v2.0_Chr7g0220861 166 HICPypECGKRYAHEYKLKNHISSH 190 679999******************6 PP
5	zf-C2H2	13.8	0.00017	232	257	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 y Cp C k + + + Lk H+r+ H RcHm_v2.0_Chr7g0220861 232 YACPyeGCEKAYIHEYKLKLHLRReH 257 89**********************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence
MDTQFHHNYF ERRTIFRSKA PAVRWVKQWV PQDVVATGGK CSLLKWVTDG TVKALNEKSK 60 ELVAPEPEPE PTTEVLFLCS YEGCGKTFID AGALRKHSHI HGERQYVCHY EGCGKKFLDS 120 SKLKRHFLIH TGERDFVCPH EGCGKAFSLD FNLRSHMKTH SQENYHICPY PECGKRYAHE 180 YKLKNHISSH HEKLQSVPVD VPKYTVPPSE KQTKTPKPSA GVYGSASSDR PYACPYEGCE 240 KAYIHEYKLK LHLRREHPGH MSDENAEHAL NTADNEMDEA SDQDVYAGKR VNGKSQKTNR 300 AKPNLKFPPA KVRKGSTPSQ ATTNPMKKPW PVKEVVYEED SEETEEDRDN VEDGWRYAGN 360 NDDDDEETED ED

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence

MDTQFHHNYF ERRTIFRSKA PAVRWVKQWV PQDVVATGGK CSLLKWVTDG TVKALNEKSK  60
ELVAPEPEPE PTTEVLFLCS YEGCGKTFID AGALRKHSHI HGERQYVCHY EGCGKKFLDS  120
SKLKRHFLIH TGERDFVCPH EGCGKAFSLD FNLRSHMKTH SQENYHICPY PECGKRYAHE  180
YKLKNHISSH HEKLQSVPVD VPKYTVPPSE KQTKTPKPSA GVYGSASSDR PYACPYEGCE  240
KAYIHEYKLK LHLRREHPGH MSDENAEHAL NTADNEMDEA SDQDVYAGKR VNGKSQKTNR  300
AKPNLKFPPA KVRKGSTPSQ ATTNPMKKPW PVKEVVYEED SEETEEDRDN VEDGWRYAGN  360
NDDDDEETED ED

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G06634.1	1e-151	C2H2 family protein