PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0222461
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family M-type_MADS
Protein Properties Length: 204aa    MW: 24373.4 Da    PI: 10.3361
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0222461genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF41.41.9e-131150342
                            --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                  SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                            i n++    tf kR++g+lKK  E+ + Cd++v  ii+s+
  RcHm_v2.0_Chr7g0222461 11 IANETSERMTFRKRKKGLLKKVGEITTICDIKVPTIIYSP 50
                            88999**********************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    
MARRKVRLHY IANETSERMT FRKRKKGLLK KVGEITTICD IKVPTIIYSP FDAELEVFPS  60
HPEVHEMVTK FRDMPQMDKT RKMINQETFL RQQIDKVREH IRKQRRDNRE NEITQVLKKV  120
GEITILCDIK VAAIIYIPFD SKPEVFPSHP EVHKLLTKFQ DMPQMDKTRE MVDQKTFYDN  180
ELTKFGSRSK SKEETTEKRR SLKF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325RRKVRLHYIANETSERMTFRKRK
22226RKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-31M-type_MADS family protein